PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G224000.1
Common NameB456_006G224000, LOC105800389
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 476aa    MW: 53539.1 Da    PI: 5.0481
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G224000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.2e-36241142101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y++++d+++++++sws+n+nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F kg+k+
  Gorai.006G224000.1  24 FLLKTYDMVDDSATDDIVSWSSNNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKGQKH 105
                         9****************************************************************999.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i+rkk
  Gorai.006G224000.1 106 LLKNIHRKK 114
                         *******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.04E-3620113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-6220113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.5E-3821113IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MASTLPSASA AGSGGGGGCG VAPFLLKTYD MVDDSATDDI VSWSSNNNSF VVWNPPEFAR  60
LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFANEDFV KGQKHLLKNI HRKKPIHSHS  120
NPQGSFVDPE RAGFEEEIER LSREKTALEA NVLRFREERS AAKHQIEELT LRADQMEQRQ  180
ETLFNFLDKA VQDPAFVEHL VRKIESMESL DVAAYNKKRR LPQIDRIEPV GEICLLDNNN  240
SSSRAEFGNI FHQDFSDKLR LELSPAVSDI HVVSQSTQSS DEDGVSPRIR ISEGEPKDAY  300
MRSEGLLFAP ERLDLSESSR SFTLQQRLNS NDEPDNHISC LLNLTLASSS SQVNRSPSLT  360
MMSQLGQEIG KDPKSRSNAN SKDSDARAYG NSRNMINGEA TLSSPKEDLN TNQKPATPPV  420
RVNDVFWERF LTERPDSSDD EESNSDHQAN PYKEEDKSST YGLARNAKNM EQLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D6e-251211317129Heat shock factor protein 1
5d5v_B6e-251211317129Heat shock factor protein 1
5d5u_B6e-251211317129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486210.0KJ748621.1 Gossypium hirsutum HSF18 (HSF18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486952.10.0PREDICTED: heat stress transcription factor A-5-like
SwissprotQ94BZ51e-164HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A0D2S8010.0A0A0D2S801_G
STRINGPOPTR_0001s32810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-145HSF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]